STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1982RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily. (208 aa)    
Predicted Functional Partners:
B005_1981
Hypothetical protein.
   
 
 0.850
B005_1195
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.828
B005_1983
Putative coagulation factor 5/8 type domain protein.
   
 
 0.750
sigE
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.697
B005_3610
RNA polymerase sigma-70 factor, sigma-E family protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.632
B005_4518
Putative RNA polymerase sigma-C factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
0.555
B005_2899
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
0.552
B005_5400
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
0.550
B005_1984
Hypothetical protein.
       0.469
rsrA
Mycothiol system anti-sigma-R factor.
  
 
 0.448
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.