STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1985Integral membrane protein MviN. (626 aa)    
Predicted Functional Partners:
B005_1901
FHA domain protein.
  
 
 
 0.836
B005_4080
Hypothetical protein.
  
 
   0.615
B005_1986
Integral membrane protein MviN.
 
    
0.587
B005_1904
Cell cycle family protein; Belongs to the SEDS family.
 
  
 0.525
B005_1987
Hypothetical protein.
 
   
 0.514
B005_2857
Cell cycle family protein; Belongs to the SEDS family.
 
  
 0.502
B005_3790
Penicillin binding transpeptidase domain protein.
  
   
 0.466
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
 
  
 0.463
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
   
 0.455
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
    0.424
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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