STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1986Integral membrane protein MviN. (627 aa)    
Predicted Functional Partners:
B005_1901
FHA domain protein.
  
 
 
 0.840
B005_1987
Hypothetical protein.
 
   
 0.622
B005_4080
Hypothetical protein.
  
 
   0.610
B005_1985
Integral membrane protein MviN.
 
    
0.587
B005_1904
Cell cycle family protein; Belongs to the SEDS family.
 
  
 0.496
B005_2857
Cell cycle family protein; Belongs to the SEDS family.
 
  
 0.484
holA
DNA polymerase III, delta subunit.
 
  
 0.478
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
   
 0.470
B005_3790
Penicillin binding transpeptidase domain protein.
  
   
 0.458
B005_1983
Putative coagulation factor 5/8 type domain protein.
 
    0.420
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.