STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1995Penicillin binding transpeptidase domain protein. (935 aa)    
Predicted Functional Partners:
mltG
yceG-like family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.722
B005_3806
divIVA domain protein.
   
 
 0.675
B005_1072
Hypothetical protein.
 
 
 
 0.658
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
  
 
 
 0.646
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
  
 
 
 0.639
B005_3790
Penicillin binding transpeptidase domain protein.
 
 
 
 0.617
B005_1994
Hypothetical protein.
       0.572
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.570
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
     0.567
B005_3148
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
   
 
 0.561
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: medium (60%) [HD]