STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2145ABC transporter family protein. (553 aa)    
Predicted Functional Partners:
B005_2144
ABC transporter family protein.
 
    
0.846
B005_3569
ABC transporter family protein.
 
     
0.725
cydD
Thiol reductant ABC exporter, CydD subunit.
 
   
0.694
B005_5300
ABC transporter family protein.
  
 
 0.466
B005_2148
Peptidase M3 family protein.
 
   0.433
B005_4475
NB-ARC domain protein.
  
 0.424
B005_3365
Short chain dehydrogenase family protein.
  
 
 0.423
B005_1310
Protein-tyrosine phosphatase.
  
 
   0.417
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.407
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.