STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2165Transposase DDE domain protein. (382 aa)    
Predicted Functional Partners:
B005_4660
recB nuclease, TM0106 family domain protein.
 
    0.696
B005_2164
Transposase DDE domain protein.
 
   
 0.688
B005_4044
Hypothetical protein.
   
    0.680
B005_4048
AAA domain protein.
  
    0.667
B005_0832
Superfamily I DNA and RNA helicase and helicase subunit.
  
    0.655
B005_1687
Transposase DDE domain protein.
 
   
 0.646
B005_3931
Hypothetical protein.
 
   
 0.487
B005_5158
DDE superendonuclease family protein.
  
    0.466
polA
DNA polymerase I family protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.420
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.