STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2172Helix-turn-helix domain protein. (410 aa)    
Predicted Functional Partners:
B005_2173
Methyltransferase domain protein.
       0.752
B005_4667
Putative membrane protein.
  
   0.571
B005_4727
DNA binding, excisionase family domain protein.
  
     0.565
B005_4783
merR regulatory family protein.
  
    0.467
B005_1494
Helix-turn-helix family protein.
  
     0.444
B005_2035
Hypothetical protein.
  
     0.439
B005_0156
Putative transcriptional regulator, TetR family protein.
  
    0.437
B005_2174
Hypothetical protein.
       0.435
B005_1728
Helix-turn-helix family protein.
  
     0.426
B005_0316
Helix-turn-helix family protein.
  
     0.425
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.