STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2180Hypothetical protein. (69 aa)    
Predicted Functional Partners:
B005_2179
Hypothetical protein.
      
0.773
B005_3700
Hypothetical protein.
  
     0.696
B005_2036
Helix-turn-helix domain protein.
  
     0.675
B005_0270
Hypothetical protein.
  
     0.584
B005_1710
Hypothetical protein.
  
     0.560
B005_2778
Putative membrane protein; Overlaps another CDS with the same product name.
  
     0.522
B005_0811
Helix-turn-helix family protein.
 
   
 0.518
B005_2178
Hypothetical protein.
       0.494
B005_1919
Helix-turn-helix family protein.
  
     0.492
B005_2483
Putative membrane protein.
  
     0.488
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.