STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2359Sugar diacid recognition family protein. (394 aa)    
Predicted Functional Partners:
B005_2358
Glycerate kinase family protein; Belongs to the glycerate kinase type-1 family.
 
  
 0.774
B005_2357
gntP permease family protein.
 
     0.746
B005_4029
Hypothetical protein.
  
     0.704
B005_1423
Major Facilitator Superfamily protein.
  
     0.664
B005_1665
Lantibiotic dehydratase domain protein.
  
     0.651
B005_3149
Proline-rich proteoglycan 2 domain protein.
  
     0.649
B005_1362
Zeta toxin family protein.
  
     0.616
B005_3440
Hypothetical protein.
  
     0.594
B005_2360
Helix-turn-helix family protein.
     
 0.582
B005_2242
Hypothetical protein.
  
     0.564
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.