STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2370Sulfate transporter family protein. (496 aa)    
Predicted Functional Partners:
B005_2047
Short chain dehydrogenase family protein.
  
 
 0.645
B005_2371
merR regulatory family protein.
 
     0.594
B005_0094
Cytochrome b/b6/petB family protein.
    
 
 0.586
B005_2623
Proton-translocating NADH-quinone oxidoreductase, chain M family protein.
  
 
 0.580
B005_3757
dinB superfamily protein.
    
 
 0.543
B005_4032
Ankyrin repeat family protein.
    
 
 0.543
cysC
Sulfate adenylyltransferase, adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
   
  
 0.536
B005_0400
Tyrosine phosphatase family protein.
   
   0.510
B005_2402
Calcineurin-like phosphoesterase family protein.
  
   0.510
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.510
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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