STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2500Carbon starvation CstA family protein. (593 aa)    
Predicted Functional Partners:
B005_2501
Hypothetical protein.
 
     0.950
B005_2502
Transport-energizing ATPase, TRC40/GET3/ArsA family protein.
 
     0.925
B005_5102
Solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.684
B005_0258
Periplasmic sugar-binding domain protein; Belongs to the binding-protein-dependent transport system permease family.
  
    0.680
B005_4480
Solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.636
B005_0641
Sodium symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.632
putP
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.610
B005_2499
Hypothetical protein.
       0.586
atoE
Short-chain fatty acids transporter.
  
     0.582
B005_2868
Proline dehydrogenase family protein.
   
  
 0.546
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.