STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2503Phosphotransferase enzyme family protein. (789 aa)    
Predicted Functional Partners:
B005_1903
Phosphatase 2C family protein.
 
 
 0.832
B005_2806
Phosphatase 2C family protein.
 
 
 0.827
B005_1936
Carbohydrate binding domain protein.
 
 
 0.802
B005_2275
Hypothetical protein.
    
 0.732
B005_1983
Putative coagulation factor 5/8 type domain protein.
  
    0.709
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.703
B005_2443
Phosphatase 2C family protein.
 
 
 0.643
B005_4080
Hypothetical protein.
 
 
 
 0.599
B005_4539
Helicase conserved C-terminal domain protein.
 
 0.598
B005_1310
Protein-tyrosine phosphatase.
   
 0.587
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.