STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2637Beta-ketoacyl synthase, C-terminal domain protein. (971 aa)    
Predicted Functional Partners:
B005_1638
Condensation domain protein; Overlaps another CDS with the same product name.
 
 0.910
B005_1888
NAD(P)H quinone oxidoreductase, PIG3 family protein.
 
   0.909
B005_1636
Amino acid adenylation domain protein.
 
 0.894
B005_4276
Phosphopantetheine attachment site family protein.
 
 0.891
B005_1642
Amino acid adenylation domain protein.
 0.888
B005_5331
4'-phosphopantetheinyl transferase superfamily protein; Belongs to the P-Pant transferase superfamily.
 
 
 0.813
B005_2636
Methyltransferase domain protein.
 
     0.809
B005_5085
NAD dependent epimerase/dehydratase family protein.
 0.807
B005_1639
Amino acid adenylation domain protein.
 
 0.797
B005_4278
Amino acid adenylation domain protein; Overlaps another CDS with the same product name.
 
 0.747
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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