STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2645Glucose inhibited division A family protein. (382 aa)    
Predicted Functional Partners:
B005_2646
RNA polymerase sigma factor, sigma-70 family protein.
 
     0.818
B005_0710
Squalene/phytoene synthase family protein.
  
  
 0.727
B005_3642
Hypothetical protein.
  
     0.634
B005_5237
Putative integral membrane protein.
  
     0.614
B005_1944
Putative membrane protein.
  
     0.589
B005_2647
Acetyltransferase family protein.
 
     0.588
B005_1791
Archaeal ATPase family protein.
  
     0.545
B005_3512
Glycosyl transferase family 2.
 
   
 0.538
B005_4053
Sigma-70, region 4 family protein.
  
   
 0.537
B005_5361
Hypothetical protein.
  
     0.519
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.