STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2646RNA polymerase sigma factor, sigma-70 family protein. (302 aa)    
Predicted Functional Partners:
B005_2645
Glucose inhibited division A family protein.
 
     0.818
B005_4239
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
    0.554
B005_0276
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
    0.548
B005_2647
Acetyltransferase family protein.
  
    0.536
B005_1632
RNA polymerase sigma factor, sigma-70 family protein.
  
   
 0.534
B005_4809
Sigma-70 region 2 family protein; Belongs to the sigma-70 factor family.
  
   
 0.498
B005_0868
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.465
B005_1633
YCII-related domain protein.
  
     0.464
B005_1195
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.455
rsrA
Mycothiol system anti-sigma-R factor.
  
 
 0.437
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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