STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2672Metal-binding domain of MaoC dehydratase family protein; Belongs to the UPF0336 family. (147 aa)    
Predicted Functional Partners:
B005_2673
maoC like domain protein.
 
 
 0.999
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.644
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   
 0.609
B005_5487
pucR C-terminal helix-turn-helix domain protein.
  
     0.576
B005_5150
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.564
rpmG
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.555
B005_5381
enoyl-CoA hydratase/isomerase family protein.
 
 0.554
B005_0217
Catalase family protein; Belongs to the catalase family.
   
 0.519
catA
Catalase.
   
 0.519
B005_0335
resB-like family protein.
  
     0.450
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.