STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2783Bacterial regulatory s, tetR family protein. (223 aa)    
Predicted Functional Partners:
B005_2782
NUDIX domain protein; Belongs to the Nudix hydrolase family.
 
     0.819
B005_2785
Phospholipid methyltransferase family protein.
 
     0.742
B005_5547
RAMP superfamily protein.
  
     0.641
B005_2236
Hypothetical protein.
  
     0.620
B005_2784
Putative membrane protein.
       0.611
B005_1236
Hypothetical protein.
  
     0.599
B005_4413
YD repeat-containing domain protein.
  
     0.568
B005_1366
CAAX protease self-immunity family protein.
  
     0.511
B005_5537
Concanavalin A-like lectin/glucanases superfamily protein.
  
     0.501
B005_1292
Hypothetical protein.
  
     0.496
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.