STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_2978Hypothetical protein. (176 aa)    
Predicted Functional Partners:
B005_2979
HAD hydrolase, IA, variant 1 family protein.
  
    0.735
B005_2980
Cobalamin-independent synthase, Catalytic domain protein.
       0.650
B005_2976
Hypothetical protein.
 
     0.542
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.532
B005_0536
50S ribosome-binding GTPase family protein; Overlaps another CDS with the same product name.
 
    0.471
B005_5497
Hypothetical protein.
  
     0.462
B005_3774
Hypothetical protein.
 
     0.428
B005_1343
Ribosomal L11 methyltransferase family protein; Belongs to the methyltransferase superfamily.
  
     0.411
B005_1745
SURF1 family protein.
  
     0.409
B005_0429
Hypothetical protein.
 
     0.404
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.