| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| B005_2981 | B005_2982 | B005_2981 | B005_2982 | NAD-dependent DNA ligase adenylation domain protein. | Diguanylate cyclase domain protein. | 0.530 |
| B005_2981 | B005_3760 | B005_2981 | B005_3760 | NAD-dependent DNA ligase adenylation domain protein. | nusB family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.755 |
| B005_2981 | dnaG | B005_2981 | B005_3653 | NAD-dependent DNA ligase adenylation domain protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | 0.542 |
| B005_2981 | gyrB | B005_2981 | B005_1960 | NAD-dependent DNA ligase adenylation domain protein. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.591 |
| B005_2981 | leuS | B005_2981 | B005_0418 | NAD-dependent DNA ligase adenylation domain protein. | leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.562 |
| B005_2981 | polA | B005_2981 | B005_3885 | NAD-dependent DNA ligase adenylation domain protein. | DNA polymerase I family protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.656 |
| B005_2981 | recA | B005_2981 | B005_3562 | NAD-dependent DNA ligase adenylation domain protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.513 |
| B005_2981 | ruvB | B005_2981 | B005_3745 | NAD-dependent DNA ligase adenylation domain protein. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.649 |
| B005_2981 | topA | B005_2981 | B005_2534 | NAD-dependent DNA ligase adenylation domain protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.515 |
| B005_2981 | xseA | B005_2981 | B005_2920 | NAD-dependent DNA ligase adenylation domain protein. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.545 |
| B005_2982 | B005_2981 | B005_2982 | B005_2981 | Diguanylate cyclase domain protein. | NAD-dependent DNA ligase adenylation domain protein. | 0.530 |
| B005_3760 | B005_2981 | B005_3760 | B005_2981 | nusB family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | NAD-dependent DNA ligase adenylation domain protein. | 0.755 |
| B005_3760 | polA | B005_3760 | B005_3885 | nusB family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | DNA polymerase I family protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.738 |
| B005_3760 | recA | B005_3760 | B005_3562 | nusB family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.645 |
| B005_3760 | ruvB | B005_3760 | B005_3745 | nusB family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.477 |
| B005_3760 | topA | B005_3760 | B005_2534 | nusB family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.714 |
| B005_3760 | xseA | B005_3760 | B005_2920 | nusB family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.505 |
| dnaG | B005_2981 | B005_3653 | B005_2981 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | NAD-dependent DNA ligase adenylation domain protein. | 0.542 |
| dnaG | gyrB | B005_3653 | B005_1960 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.753 |
| dnaG | polA | B005_3653 | B005_3885 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | DNA polymerase I family protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.736 |