STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3016GDSL-like Lipase/Acylhydrolase family protein. (310 aa)    
Predicted Functional Partners:
B005_2903
Putative membrane protein.
  
     0.614
B005_3015
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
       0.549
B005_0731
Hypothetical protein.
  
     0.534
B005_5163
Chitin binding domain protein.
  
     0.526
gltX
glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
       0.524
B005_1049
Hypothetical protein.
  
   0.523
B005_1297
Tetratricopeptide repeat family protein.
 
     0.519
B005_0880
Hypothetical protein.
  
     0.516
B005_3133
Putative membrane protein.
 
     0.513
cex
Exoglucanase/xylanase.
 
   
 0.503
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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