STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_30222Fe-2S iron-sulfur cluster binding domain protein. (362 aa)    
Predicted Functional Partners:
B005_0962
Aminotransferase class-V family protein.
  
 0.928
B005_5501
SUF system FeS assembly protein, NifU family.
  
 0.915
B005_3023
Putative metal-dependent hydrolase family protein.
     0.908
B005_4613
Cytochrome P450 family protein.
 0.903
B005_0268
Cytochrome P450 family protein.
 
 0.889
B005_2016
Flavin oxidoreductase / NADH oxidase family protein.
  
 0.850
B005_2047
Short chain dehydrogenase family protein.
  
 
 0.833
nuoI
NADH-quinone oxidoreductase, chain I family protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.809
B005_3945
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
 
 0.785
B005_3024
Short chain dehydrogenase family protein.
 
  
 0.774
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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