B005_3024 protein (Nocardiopsis alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B005_3024

Short chain dehydrogenase family protein. (577 aa)

Predicted Functional Partners:

B005_3023

0.915

B005_3022

0.774

B005_2047

0.770

B005_3026

0.770

eryA

0.756

B005_1637

0.742

B005_3021

0.711

B005_3365

0.693

B005_2044

0.672

B005_4715

0.619

Your Current Organism:

Nocardiopsis alba

NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B005_1637	B005_2044	B005_1637	B005_2044	Condensation domain protein; Overlaps another CDS with the same product name.	Amino acid adenylation domain protein.	0.999
B005_1637	B005_2047	B005_1637	B005_2047	Condensation domain protein; Overlaps another CDS with the same product name.	Short chain dehydrogenase family protein.	0.999
B005_1637	B005_3022	B005_1637	B005_3022	Condensation domain protein; Overlaps another CDS with the same product name.	2Fe-2S iron-sulfur cluster binding domain protein.	0.609
B005_1637	B005_3024	B005_1637	B005_3024	Condensation domain protein; Overlaps another CDS with the same product name.	Short chain dehydrogenase family protein.	0.742
B005_1637	B005_3365	B005_1637	B005_3365	Condensation domain protein; Overlaps another CDS with the same product name.	Short chain dehydrogenase family protein.	0.999
B005_1637	eryA	B005_1637	B005_3363	Condensation domain protein; Overlaps another CDS with the same product name.	Erythronolide synthase, modules 3 and 4.	0.999
B005_2044	B005_1637	B005_2044	B005_1637	Amino acid adenylation domain protein.	Condensation domain protein; Overlaps another CDS with the same product name.	0.999
B005_2044	B005_2047	B005_2044	B005_2047	Amino acid adenylation domain protein.	Short chain dehydrogenase family protein.	0.998
B005_2044	B005_3024	B005_2044	B005_3024	Amino acid adenylation domain protein.	Short chain dehydrogenase family protein.	0.672
B005_2044	B005_3365	B005_2044	B005_3365	Amino acid adenylation domain protein.	Short chain dehydrogenase family protein.	0.997
B005_2044	eryA	B005_2044	B005_3363	Amino acid adenylation domain protein.	Erythronolide synthase, modules 3 and 4.	0.995
B005_2047	B005_1637	B005_2047	B005_1637	Short chain dehydrogenase family protein.	Condensation domain protein; Overlaps another CDS with the same product name.	0.999
B005_2047	B005_2044	B005_2047	B005_2044	Short chain dehydrogenase family protein.	Amino acid adenylation domain protein.	0.998
B005_2047	B005_3022	B005_2047	B005_3022	Short chain dehydrogenase family protein.	2Fe-2S iron-sulfur cluster binding domain protein.	0.833
B005_2047	B005_3024	B005_2047	B005_3024	Short chain dehydrogenase family protein.	Short chain dehydrogenase family protein.	0.770
B005_2047	B005_3365	B005_2047	B005_3365	Short chain dehydrogenase family protein.	Short chain dehydrogenase family protein.	0.983
B005_2047	eryA	B005_2047	B005_3363	Short chain dehydrogenase family protein.	Erythronolide synthase, modules 3 and 4.	0.976
B005_3021	B005_3022	B005_3021	B005_3022	Bacterial regulatory s, tetR family protein.	2Fe-2S iron-sulfur cluster binding domain protein.	0.613
B005_3021	B005_3023	B005_3021	B005_3023	Bacterial regulatory s, tetR family protein.	Putative metal-dependent hydrolase family protein.	0.754
B005_3021	B005_3024	B005_3021	B005_3024	Bacterial regulatory s, tetR family protein.	Short chain dehydrogenase family protein.	0.711