STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3067Subtilase family protein; Belongs to the peptidase S8 family. (886 aa)    
Predicted Functional Partners:
B005_3066
Ribosomal L7/L12 C-terminal domain protein.
       0.483
B005_1423
Major Facilitator Superfamily protein.
 
     0.463
B005_3512
Glycosyl transferase family 2.
  
 
 
 0.440
B005_4029
Hypothetical protein.
 
  
 0.436
B005_2382
Hypothetical protein.
  
     0.423
B005_1665
Lantibiotic dehydratase domain protein.
  
     0.420
B005_4780
Neurotransmitter symporter family protein; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
  
  
 0.403
B005_3068
Hypothetical protein.
       0.401
B005_4414
Concanavalin A-like lectin/glucanases superfamily protein.
 
 
 0.400
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.