STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3118Cobalt transport family protein. (267 aa)    
Predicted Functional Partners:
B005_3117
Cobalt ABC transporter, ATP-binding family protein.
 
 0.995
B005_3116
ABC-type cobalt transport system, permease component family protein.
 
  
 0.973
B005_3380
bioY family protein.
  
 0.945
B005_3381
ABC transporter family protein.
 
 
 0.896
cbiT
precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit.
  
  
 0.625
B005_3119
enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.612
truA
tRNA pseudouridine(38-40) synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.582
B005_2066
PAP2 superfamily protein.
  
    0.535
B005_0753
Nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.
 
 
 0.516
B005_3962
Nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.
 
 
 0.509
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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