STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3134Acyltransferase family protein. (457 aa)    
Predicted Functional Partners:
B005_3135
Hypothetical protein.
 
   
 0.885
B005_0878
Putative membrane protein.
 
   
 0.823
B005_3130
ubiE/COQ5 methyltransferase family protein.
 
   
 0.809
B005_0874
Hypothetical protein.
 
   
 0.751
B005_0875
F5/8 type C domain protein.
 
   
 0.746
B005_0876
Glycosyl transferases group 1 family protein.
 
    0.697
B005_3133
Putative membrane protein.
  
   
 0.692
B005_1778
ompA family protein.
  
     0.597
B005_1039
Hypothetical protein.
  
     0.594
B005_2953
Hypothetical protein.
  
     0.587
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.