STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3188Response regulator. (132 aa)    
Predicted Functional Partners:
B005_1896
Sensory box protein.
 
 
 0.922
B005_1504
His Kinase A domain protein.
 
 
 0.848
B005_5336
HAMP domain protein.
 
 
 0.843
B005_0029
His Kinase A domain protein.
 
 
 0.823
B005_2790
HAMP domain protein.
 
 
 0.813
B005_5429
HAMP domain protein.
 
 
 0.813
B005_0147
HAMP domain protein.
 
 
 0.804
B005_0921
HAMP domain protein.
 
 
 0.797
B005_3189
DALR anticodon binding domain protein.
       0.785
B005_2072
HAMP domain protein.
 
 
 0.726
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.