B005_3309 protein (Nocardiopsis alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B005_3309

Pyridine nucleotide-disulfide oxidoreductase family protein. (421 aa)

Predicted Functional Partners:

B005_0245

0.934

nirD

0.820

B005_5504

0.790

B005_5585

0.770

B005_3860

0.710

cobA

0.671

B005_0160

0.652

B005_2414

0.599

B005_3310

0.598

B005_3022

0.505

Your Current Organism:

Nocardiopsis alba

NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B005_0160	B005_2414	B005_0160	B005_2414	Oxidoreductase NAD-binding domain protein; Belongs to the globin family.	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.555
B005_0160	B005_3022	B005_0160	B005_3022	Oxidoreductase NAD-binding domain protein; Belongs to the globin family.	2Fe-2S iron-sulfur cluster binding domain protein.	0.590
B005_0160	B005_3309	B005_0160	B005_3309	Oxidoreductase NAD-binding domain protein; Belongs to the globin family.	Pyridine nucleotide-disulfide oxidoreductase family protein.	0.652
B005_0160	cobA	B005_0160	B005_0537	Oxidoreductase NAD-binding domain protein; Belongs to the globin family.	uroporphyrinogen-III C-methyltransferase.	0.510
B005_0245	B005_2414	B005_0245	B005_2414	Molybdopterin dinucleotide binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.907
B005_0245	B005_3309	B005_0245	B005_3309	Molybdopterin dinucleotide binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Pyridine nucleotide-disulfide oxidoreductase family protein.	0.934
B005_0245	cobA	B005_0245	B005_0537	Molybdopterin dinucleotide binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	uroporphyrinogen-III C-methyltransferase.	0.472
B005_0245	nirD	B005_0245	B005_0242	Molybdopterin dinucleotide binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Nitrite reductase [NAD(P)H], small subunit.	0.980
B005_2414	B005_0160	B005_2414	B005_0160	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Oxidoreductase NAD-binding domain protein; Belongs to the globin family.	0.555
B005_2414	B005_0245	B005_2414	B005_0245	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Molybdopterin dinucleotide binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.907
B005_2414	B005_3309	B005_2414	B005_3309	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Pyridine nucleotide-disulfide oxidoreductase family protein.	0.599
B005_2414	B005_3860	B005_2414	B005_3860	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	GXGXG motif family protein.	0.770
B005_2414	B005_5504	B005_2414	B005_5504	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Rieske domain protein.	0.413
B005_2414	B005_5585	B005_2414	B005_5585	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Tat (twin-arginine translocation) pathway signal sequence domain protein.	0.413
B005_2414	cobA	B005_2414	B005_0537	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	uroporphyrinogen-III C-methyltransferase.	0.521
B005_2414	nirD	B005_2414	B005_0242	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Nitrite reductase [NAD(P)H], small subunit.	0.954
B005_3022	B005_0160	B005_3022	B005_0160	2Fe-2S iron-sulfur cluster binding domain protein.	Oxidoreductase NAD-binding domain protein; Belongs to the globin family.	0.590
B005_3022	B005_3309	B005_3022	B005_3309	2Fe-2S iron-sulfur cluster binding domain protein.	Pyridine nucleotide-disulfide oxidoreductase family protein.	0.505
B005_3022	B005_3860	B005_3022	B005_3860	2Fe-2S iron-sulfur cluster binding domain protein.	GXGXG motif family protein.	0.457
B005_3022	cobA	B005_3022	B005_0537	2Fe-2S iron-sulfur cluster binding domain protein.	uroporphyrinogen-III C-methyltransferase.	0.585