STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3344Transcriptional regulator, SARP family protein. (594 aa)    
Predicted Functional Partners:
B005_5033
Tetratricopeptide repeat family protein.
 
  
 0.830
B005_0210
HAD hydrolase, IA, variant 1 family protein.
  
    0.590
B005_3343
Helix-turn-helix domain, rpiR family protein.
 
     0.563
B005_3699
Putative dNA-binding protein.
  
    0.558
B005_1407
Helix-turn-helix family protein.
  
    0.557
B005_0811
Helix-turn-helix family protein.
  
    0.554
B005_3233
marR family protein.
  
    0.553
B005_0342
Cytidine and deoxycytidylate deaminase zinc-binding region family protein.
   
  
 0.544
B005_1125
Cell envelope-related function transcriptional attenuator common domain protein.
   
    0.537
B005_4798
Bacterial regulatory helix-turn-helix s, AraC family protein.
   
    0.536
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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