B005_3373 protein (Nocardiopsis alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B005_3373

Bacterial regulatory s, gntR family protein. (200 aa)

Predicted Functional Partners:

B005_0254

0.774

B005_4616

0.774

B005_3457

0.773

B005_0696

0.767

B005_5263

0.752

B005_0793

0.710

B005_4019

0.645

B005_3376

0.622

B005_3378

0.584

B005_3377

0.577

Your Current Organism:

Nocardiopsis alba

NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
B005_0254	B005_0696	Iron dependent repressor, N-terminal DNA binding domain protein.	Putative transcriptional regulator, GntR family protein.	0.764
B005_0254	B005_0793	Iron dependent repressor, N-terminal DNA binding domain protein.	Bacterial regulatory s, gntR family protein.	0.691
B005_0254	B005_3373	Iron dependent repressor, N-terminal DNA binding domain protein.	Bacterial regulatory s, gntR family protein.	0.774
B005_0254	B005_4019	Iron dependent repressor, N-terminal DNA binding domain protein.	Bacterial regulatory s, gntR family protein; Putative dimethylmenaquinone methyltransferase.	0.659
B005_0254	B005_5263	Iron dependent repressor, N-terminal DNA binding domain protein.	Bacterial regulatory s, gntR family protein.	0.759
B005_0696	B005_0254	Putative transcriptional regulator, GntR family protein.	Iron dependent repressor, N-terminal DNA binding domain protein.	0.764
B005_0696	B005_0793	Putative transcriptional regulator, GntR family protein.	Bacterial regulatory s, gntR family protein.	0.647
B005_0696	B005_3373	Putative transcriptional regulator, GntR family protein.	Bacterial regulatory s, gntR family protein.	0.767
B005_0696	B005_3457	Putative transcriptional regulator, GntR family protein.	Bacterial regulatory s, gntR family protein.	0.748
B005_0696	B005_4019	Putative transcriptional regulator, GntR family protein.	Bacterial regulatory s, gntR family protein; Putative dimethylmenaquinone methyltransferase.	0.496
B005_0696	B005_5263	Putative transcriptional regulator, GntR family protein.	Bacterial regulatory s, gntR family protein.	0.597
B005_0793	B005_0254	Bacterial regulatory s, gntR family protein.	Iron dependent repressor, N-terminal DNA binding domain protein.	0.691
B005_0793	B005_0696	Bacterial regulatory s, gntR family protein.	Putative transcriptional regulator, GntR family protein.	0.647
B005_0793	B005_3373	Bacterial regulatory s, gntR family protein.	Bacterial regulatory s, gntR family protein.	0.710
B005_0793	B005_3457	Bacterial regulatory s, gntR family protein.	Bacterial regulatory s, gntR family protein.	0.706
B005_0793	B005_4616	Bacterial regulatory s, gntR family protein.	Bacterial regulatory s, gntR family protein.	0.674
B005_3373	B005_0254	Bacterial regulatory s, gntR family protein.	Iron dependent repressor, N-terminal DNA binding domain protein.	0.774
B005_3373	B005_0696	Bacterial regulatory s, gntR family protein.	Putative transcriptional regulator, GntR family protein.	0.767
B005_3373	B005_0793	Bacterial regulatory s, gntR family protein.	Bacterial regulatory s, gntR family protein.	0.710
B005_3373	B005_3376	Bacterial regulatory s, gntR family protein.	Bacterial extracellular solute-binding, 7 family protein.	0.622