STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3376Bacterial extracellular solute-binding, 7 family protein. (371 aa)    
Predicted Functional Partners:
B005_3377
Tripartite ATP-independent periplasmic transporter, DctQ family.
 
  
 0.981
B005_3378
dctM-like transporters family protein.
 
  
 0.960
B005_3374
hpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family.
 
     0.867
B005_3375
Carbon-nitrogen hydrolase family protein.
 
     0.815
B005_0251
dctM-like transporters family protein.
 
  
 0.709
B005_3379
Demethylmenaquinone methyltransferase family protein.
 
     0.705
B005_0239
dctM-like transporters family protein.
 
  
 0.644
B005_3373
Bacterial regulatory s, gntR family protein.
 
     0.622
B005_1182
TRAP transporter, 4TM/12TM fusion family protein.
  
     0.594
B005_4029
Hypothetical protein.
  
     0.539
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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