STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3380bioY family protein. (211 aa)    
Predicted Functional Partners:
B005_3381
ABC transporter family protein.
 
 
 0.998
B005_3382
Cobalt transport family protein.
 
 0.997
B005_3118
Cobalt transport family protein.
  
 0.945
B005_1106
biotin--[acetyl-CoA-carboxylase] ligase.
 
   
 0.678
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
  
  
 0.665
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.547
accA1
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
 
     0.541
B005_3383
Beta-lactamase enzyme family protein.
  
    0.523
nadC
Nicotinate-nucleotide diphosphorylase; Belongs to the NadC/ModD family.
  
  
 0.516
B005_0182
Carbamoyl-phosphate synthase L chain, ATP binding domain protein.
 
     0.471
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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