STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3431tadE-like family protein; Overlaps another CDS with the same product name. (126 aa)    
Predicted Functional Partners:
B005_3432
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
      0.941
cpaB
Flp pilus assembly protein CpaB.
  
  
 0.823
B005_3428
Type II secretion system (T2SS), F family protein.
  
  
 0.783
B005_3430
tadE-like family protein; Overlaps another CDS with the same product name.
       0.782
B005_3427
Type II secretion system (T2SS), F family protein.
  
  
 0.768
B005_3429
Type II/IV secretion system family protein.
  
  
 0.766
B005_1269
SAF-like family protein.
  
  
 0.597
B005_1836
Type II secretion system (T2SS), F family protein.
  
  
 0.590
B005_1837
Type II secretion system (T2SS), F family protein.
  
  
 0.590
B005_2996
Diguanylate cyclase domain protein.
  
    0.474
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.