STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3452Alpha mannosidase, middle domain protein. (1036 aa)    
Predicted Functional Partners:
B005_3449
Bacterial extracellular solute-binding family protein.
 
     0.689
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
    0.581
B005_4169
Bacterial alpha-L-rhamnosidase family protein.
  
    0.577
B005_1124
GHMP kinase family protein; Belongs to the GHMP kinase family.
  
    0.569
B005_3768
Hypothetical protein.
   
    0.536
B005_5336
HAMP domain protein.
   
    0.512
B005_3454
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
    0.506
B005_4823
marR family protein.
  
     0.498
cmk
Cytidylate kinase.
  
    0.430
B005_3448
ROK family protein.
 
  
 0.422
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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