STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3552Glycosyl hydrolase family 3 N terminal domain protein. (479 aa)    
Predicted Functional Partners:
B005_0908
Glycosyl hydrolase family 3 C-terminal domain protein.
  
  
 
0.926
B005_3493
Glycosyl hydrolase family 20, catalytic domain protein.
 
  
 0.922
chtA
Chitinase 63.
  
 
 0.919
B005_3231
Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
 
 0.917
B005_3655
Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
 
 0.916
chiA
chiA; Belongs to the glycosyl hydrolase 18 family.
   
 
 0.903
B005_1385
Beta-lactamase family protein.
  
 0.778
B005_3555
Bacterial extracellular solute-binding family protein.
 
   
 0.626
B005_3554
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
 
   
 0.614
murQ
SIS domain protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
  
 0.595
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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