STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3567Amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein. (224 aa)    
Predicted Functional Partners:
B005_3566
Amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
 
0.996
B005_3569
ABC transporter family protein.
 0.996
B005_3568
Bacterial extracellular solute-binding s, 3 family protein.
 
 0.995
B005_2447
Bacterial extracellular solute-binding s, 3 family protein.
 
 0.989
B005_0854
ABC transporter family protein.
 
 0.943
ehuA
Ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA.
 
 
 0.941
pheC
Cyclohexadienyl dehydratase; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.909
B005_0852
Bacterial extracellular solute-binding s, 3 family protein.
 
 0.850
ehuB
Ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB.
 
 
 0.782
B005_0853
Amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
  
  
 
0.531
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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