STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3574Hypothetical protein. (242 aa)    
Predicted Functional Partners:
B005_1073
Hypothetical protein.
 
     0.637
B005_2870
Hypothetical protein.
  
     0.587
B005_1817
Hypothetical protein.
  
     0.526
B005_2161
Helix-turn-helix family protein.
  
     0.521
cofC
2-phospho-L-lactate guanylyltransferase; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.
  
     0.495
B005_3573
Bacterial regulatory s, tetR family protein.
       0.492
B005_1530
Uncharacterized protein.
  
     0.472
vdh
Vitamin D(3) 25-hydroxylase; Belongs to the cytochrome P450 family.
       0.458
B005_1403
S-adenosyl methyltransferase family protein; Overlaps another CDS with the same product name.
  
     0.451
B005_3615
Hypothetical protein.
  
     0.436
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.