STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3591comEC/Rec2-related domain protein. (764 aa)    
Predicted Functional Partners:
B005_3592
Helix-hairpin-helix motif family protein.
 
  
 0.939
holA
DNA polymerase III, delta subunit.
    
 0.928
dprA
DNA protecting protein DprA.
 
  
 0.903
pheT
phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
   
 0.845
B005_0919
Phosphoribosyl transferase domain protein.
 
  
 0.845
B005_3775
Type IV leader peptidase family protein.
 
  
 0.805
B005_0103
Exonuclease, DNA polymerase III, epsilon subunit family domain protein.
 
  
 0.792
serB
Phosphoserine phosphatase SerB.
     
 0.762
ribA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.733
B005_2450
Hypothetical protein.
 
  
 0.715
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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