STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sphSphingomyelin phosphodiesterase. (616 aa)    
Predicted Functional Partners:
B005_1276
Phospholipase D family protein.
  
 
 0.920
B005_4110
Lipid kinase, YegS/Rv2252/BmrU family protein.
   
 
  0.905
B005_4258
Haloacid dehalogenase-like hydrolase family protein.
    
  0.901
B005_1767
Methyltransferase domain protein.
     
  0.900
B005_3660
Ribosomal RNA adenine dimethylase family protein.
     
  0.900
B005_4077
CDP-alcohol phosphatidyltransferase family protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
  0.900
B005_5369
Phosphatidylserine decarboxylase family protein.
     
  0.900
suhB
Inositol-1-monophosphatase SuhB.
     
  0.900
pssA
CDP-diacylglycerol-serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
  0.802
B005_3755
Aminotransferase class-V family protein.
  
 
   0.523
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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