STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3644Antibiotic biosynthesis monooxygenase family protein. (97 aa)    
Predicted Functional Partners:
B005_3643
Glycosyl transferase 2 family protein.
       0.563
glyS
glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.528
B005_1060
CAAX protease self-immunity family protein.
  
     0.526
B005_1834
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
  
     0.503
B005_0657
doxX family protein.
  
    0.493
B005_3720
Hypothetical protein.
  
     0.491
B005_3846
Tryptophan-associated transmembrane family protein.
  
     0.473
B005_4853
Von Willebrand factor type A.
  
     0.468
B005_2012
Hypothetical protein.
 
     0.463
B005_3227
divIVA family protein.
  
     0.460
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.