STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3660Ribosomal RNA adenine dimethylase family protein. (214 aa)    
Predicted Functional Partners:
B005_5369
Phosphatidylserine decarboxylase family protein.
 
  
 0.928
B005_1767
Methyltransferase domain protein.
  
  
 
0.909
sph
Sphingomyelin phosphodiesterase.
     
  0.900
pssA
CDP-diacylglycerol-serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.862
B005_3664
Transglutaminase-like superfamily protein.
 
     0.675
B005_3661
ABC-2 type transporter family protein.
       0.655
B005_3662
Daunorubicin resistance ABC transporter, ATP-binding family protein.
       0.610
B005_3663
Putative membrane protein.
       0.610
B005_3666
Asparagine synthase family protein.
 
     0.572
B005_3169
Hypothetical protein.
  
     0.560
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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