STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3679GDSL-like Lipase/Acylhydrolase family protein. (633 aa)    
Predicted Functional Partners:
B005_1692
Type VII secretion integral membrane protein EccD.
  
     0.560
B005_2464
Putative glucan endo-1,3-beta-D-glucosidase.
 
   
 0.531
B005_0879
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.477
B005_3016
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.469
cex
Exoglucanase/xylanase.
 
   
 0.455
B005_1049
Hypothetical protein.
  
   0.436
B005_5165
Glycosyl hydrolases 6 family protein; Belongs to the glycosyl hydrolase family 6.
 
 
 0.402
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.