STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3755Aminotransferase class-V family protein. (456 aa)    
Predicted Functional Partners:
B005_5501
SUF system FeS assembly protein, NifU family.
 
 
 0.908
sufC
feS assembly ATPase SufC.
 
  
 0.890
sufB
feS assembly protein SufB.
 
 
 0.889
sufD
feS assembly protein SufD.
 
 
 0.885
B005_5500
Hypothetical protein.
 
  
 0.528
sph
Sphingomyelin phosphodiesterase.
  
 
   0.523
B005_3757
dinB superfamily protein.
  
   0.472
B005_1729
endonuclease/Exonuclease/phosphatase family protein.
    
   0.459
B005_3823
endonuclease/Exonuclease/phosphatase family protein.
    
   0.459
egtD
Hypothetical protein; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
  
  
 0.437
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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