STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpeRibulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (223 aa)    
Predicted Functional Partners:
B005_1173
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
 
 0.989
tkt
Transketolase; Belongs to the transketolase family.
 0.984
rpiB
Ribose-5-phosphate isomerase B.
 
 
 0.943
xylB
Xylulokinase.
   
 0.932
B005_1172
Transketolase, pyrimidine binding domain protein.
  
 
 0.924
B005_2753
Short chain dehydrogenase family protein.
  
 
 0.920
gnd
6-phosphogluconate dehydrogenase.
    
 0.909
pgk
Phosphoglycerate kinase family protein; Belongs to the phosphoglycerate kinase family.
 
 
 0.872
B005_5105
pfkB carbohydrate kinase family protein.
  
 0.844
prs
Ribose-phosphate diphosphokinase family protein; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
 
  
 0.809
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.