STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3789Putative membrane protein. (92 aa)    
Predicted Functional Partners:
B005_3790
Penicillin binding transpeptidase domain protein.
  
 
 0.853
B005_3800
Cell division FtsQ family protein; Essential cell division protein.
   
 
 0.772
B005_1064
Putative sigma E regulatory protein, MucB/RseB.
  
     0.706
mraW
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
  
 0.683
B005_4086
Hypothetical protein.
 
     0.675
B005_0495
Hypothetical protein.
  
     0.591
B005_3774
Hypothetical protein.
 
    0.566
mraZ
mraZ family protein; Belongs to the MraZ family.
  
  
 0.566
B005_1620
ABC-2 type transporter family protein.
 
     0.539
B005_4084
TPR repeat family protein.
  
     0.524
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.