STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3878Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family. (524 aa)    
Predicted Functional Partners:
B005_3879
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
B005_3880
ABC transporter family protein.
 
 
 0.996
B005_3881
ABC transporter family protein.
 
  
 0.968
B005_3882
Receptor ligand binding region family protein.
 
  
 0.907
B005_3883
Receptor ligand binding region family protein.
 
  
 0.907
B005_5334
Receptor ligand binding region family protein.
 
  
 0.729
B005_1326
Hypothetical protein.
  
  
 0.589
B005_2146
Hypothetical protein.
  
  
 0.589
B005_4470
Periplasmic binding domain protein.
  
  
 0.589
B005_3876
Putative transcriptional regulatory protein pdtaR.
     
 0.479
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.