STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3879Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family. (327 aa)    
Predicted Functional Partners:
B005_3878
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
B005_3880
ABC transporter family protein.
 
 0.998
B005_3881
ABC transporter family protein.
  
 0.985
B005_3882
Receptor ligand binding region family protein.
 
  
 0.907
B005_3883
Receptor ligand binding region family protein.
 
  
 0.907
B005_3860
GXGXG motif family protein.
     
 0.742
B005_5334
Receptor ligand binding region family protein.
 
  
 0.711
B005_3634
Cysteine-rich secretory family protein.
   
   0.633
B005_4470
Periplasmic binding domain protein.
  
  
 0.625
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
    0.603
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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