STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_3961Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name. (291 aa)    
Predicted Functional Partners:
B005_3962
Nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.
  
 0.965
B005_3960
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
  
 0.962
B005_3959
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
 0.957
B005_4183
ABC transporter family protein.
  
 0.905
B005_0786
Oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
  
 0.882
B005_4496
ABC transporter family protein; Belongs to the ABC transporter superfamily.
  
 0.877
B005_3352
Oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
  
 0.848
B005_4184
Binding--dependent transport system inner membrane component family protein.
  
 0.839
B005_4499
Binding--dependent transport system inner membrane component family protein.
  
 0.839
B005_0751
Binding--dependent transport system inner membrane component family protein.
  
 0.836
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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