STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4027Hypothetical protein. (260 aa)    
Predicted Functional Partners:
B005_2047
Short chain dehydrogenase family protein.
  
 
 0.860
eryA
Erythronolide synthase, modules 3 and 4.
  
 
 0.807
B005_3365
Short chain dehydrogenase family protein.
  
 
 0.804
B005_4026
Hypothetical protein.
 
     0.681
B005_4028
Bacterial regulatory s, tetR family protein.
  
    0.628
B005_2046
Short chain dehydrogenase family protein.
  
 
 0.603
B005_2044
Amino acid adenylation domain protein.
  
 
 0.557
B005_2045
Acyl transferase domain protein.
  
 
 0.479
B005_3265
rNA polymerase, sigma-24 subunit, ECF subfamily.
 
     0.452
B005_0372
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.442
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.