STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4060Hypothetical protein. (211 aa)    
Predicted Functional Partners:
napA
Serine protease.
  
   
 0.585
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.536
B005_3244
Extracellular metalloprotease 1 domain protein.
  
     0.506
B005_1177
endonuclease/Exonuclease/phosphatase family protein.
 
   
 0.492
B005_4061
Hypothetical protein.
       0.488
B005_4062
SEC-C motif family protein.
       0.488
B005_2464
Putative glucan endo-1,3-beta-D-glucosidase.
  
     0.471
B005_4273
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
     0.452
B005_3405
Pectate lyase family protein.
  
     0.424
B005_3860
GXGXG motif family protein.
     
 0.416
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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