STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_40672-keto-3-deoxygluconate permease family protein. (344 aa)    
Predicted Functional Partners:
B005_4066
Hypothetical protein.
 
   
 0.952
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.934
B005_4064
Bacterial regulatory s, gntR family protein.
 
     0.721
B005_3324
Hypothetical protein.
 
   
 0.712
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein.
  
  
 0.617
B005_5098
Hypothetical protein.
 
   
 0.555
B005_4063
Hypothetical protein.
       0.470
B005_4068
uvrD/REP helicase N-terminal domain protein.
       0.438
B005_4178
Bacterial regulatory s, gntR family protein.
 
     0.416
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.